Bol-MIR319b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   TAGGAAATATA  T   T                    T   C   TC  G T           A -  T   AC    C   C  AA  C      ACGAAAAT
              GA AGG AGGGAGCTTCCTTTAGTCCA TCA AGA  AT A ATGATCCAATT G CT CCG  TCAT CAT CA  TA CGAGTC        
              || ||| |||||||||||||||||||| ||| |||  || | ||||||||||| | || |||  |||| ||| ||  || ||||||        T
              CT TCC TCCCTCGAGGGAAGTCAGGT AGT TCT  TA T TACTAGGTTAA C GA GGC  AGTA GTA GT  AT GCTCAG        
TTAAAATCTTGTTA  T   -                    T   C   CT  G -           A A  T   GT    A   A  AA  T      ATTCAACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-265 Aly-MIR319a Aly-scaffold_7: 7941292-7941501 - Brassica oleracea Bol-MIR319b Bol-C07: 43171718-43171928 +
SY-616 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Brassica oleracea Bol-MIR319b Bol-C07: 43171718-43171928 +
SY-852 Bol-MIR319a Bol-C01: 10405597-10405806 + Brassica oleracea Bol-MIR319b Bol-C07: 43171718-43171928 +
SY-857 Bol-MIR319b Bol-C07: 43171718-43171928 + Brassica rapa Bra-MIR319a Bra-A01: 7566510-7566719 +
SY-858 Bol-MIR319b Bol-C07: 43171718-43171928 + Brassica rapa Bra-MIR319d Bra-Scaffold25053: 101079-101289 +
SY-859 Bol-MIR319b Bol-C07: 43171718-43171928 + Capsella rubella Cru-MIR319b Cru-scaffold_7: 6507492-6507703 -
SY-860 Bol-MIR319b Bol-C07: 43171718-43171928 + Eutrema salsugineum Esa-MIR319c Esa-scaffold_1: 6999831-7000041 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol005908 1.5 2 NA
Bol008198 1.5 NA NA
Bol023199 1.5 2 NA
Bol027782 1.5 2 NA
Bol032889 1.5 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference