Bol-MIR390b

Basic info.

• miRNA locus ID
• Bol-MIR390b

• miRNA locus accession
• PmiREN002355

• Organism
• Brassica oleracea

• Genomic location
• Bol-C04  5962629  5962745  +

• Comments
• A member of family MIR390

• Confidence level
• 

Secondary strurture and sequence

AAA    --  A   A  T  A          G           TCAT    AATCTCAT
   GTAG  AG AGA TC GT AAGCTCAGGA GGATAGCGCCA    ATAT        
   ||||  || ||| || || |||||||||| |||||||||||    ||||         
   CGTC  TC TCT GG TA TTTGAGTCCT CCTGTCGCGGT    TATA        
TGA    AT  C   C  T  C          A           -TTT    GCTACACT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019