Bra-MIR165c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AA    T  TT -C         A   TT      A        AT   C         -A   A  -   ATAA       TAT
   AGGC AT  C  GTTGAGGGG ATG  GTTTGG TCGAGGAT  CAT ATATGCATA  TGC TA CAT    TATCATA   
   |||| ||  |  ||||||||| |||  |||||| ||||||||  ||| |||||||||  ||| || |||    |||||||   A
   TCCG TA  G  CAACTCCCC TAC  CGGACC GGCTCTTA  GTA TATACGTGT  ACG AT GTA    ATAGTAT   
ACT    T  TT CA         C   TT      A        AT   -         AA   -  C   --GC       TAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-107 Aly-MIR165b Aly-scaffold_6: 24606423-24606600 + Brassica rapa Bra-MIR165c Bra-A09: 449472-449636 -
SY-491 Ath-MIR165b Ath-Chr4: 369836-370009 - Brassica rapa Bra-MIR165c Bra-A09: 449472-449636 -
SY-773 Bol-MIR165c Bol-C09: 468121-468250 + Brassica rapa Bra-MIR165c Bra-A09: 449472-449636 -
SY-960 Bra-MIR165c Bra-A09: 449472-449636 - Eutrema salsugineum Esa-MIR166g Esa-scaffold_3: 546347-546498 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B01017.1 0.5 NA NA
Brara.D02105.1 0.5 NA NA
Brara.I02808.1 0.5 NA NA
Brara.J01422.1 0.5 NA NA
Brara.K00217.1 0.5 NA NA
Brara.E00955.1 1.5 NA NA
Brara.F00211.1 1.5 NA NA
Brara.F01856.1 1.5 NA NA
Brara.H00179.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference