Bra-MIR166b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        -  TTTCTCTT   A        TT      C    A        CTT   --AT         TC     TTTAATCGAAT
    AGGG GC        TTG GGGGAATG  GTTTGG TCGA GACTCTAG   ATC    GTTAGATCT  TTCGA           
    |||| ||        ||| ||||||||  |||||| |||| ||||||||   |||    |||||||||  |||||            
    TCCC CG        AAC CCCCTTAC  CGGACC GGCT CTGGGATT   TAG    TAGTCTAGA  GTTTG           
TTCG    T  ---TTATT   C        TT      A    G        --T   GATT         --     TACCTCCAAAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-113 Aly-MIR166a Aly-scaffold_4: 22684208-22684381 + Brassica rapa Bra-MIR166b Bra-A04: 21244922-21245087 +
SY-120 Aly-MIR166b Aly-scaffold_5: 20552771-20552919 + Brassica rapa Bra-MIR166b Bra-A04: 21244922-21245087 +
SY-776 Bol-MIR166a Bol-C04: 3332597-3332767 + Brassica rapa Bra-MIR166b Bra-A04: 21244922-21245087 +
SY-783 Bol-MIR166c Bol-C08: 32995401-32995551 + Brassica rapa Bra-MIR166b Bra-A04: 21244922-21245087 +
SY-789 Bol-MIR166d Bol-C04: 40715614-40715778 + Brassica rapa Bra-MIR166b Bra-A04: 21244922-21245087 +
SY-965 Bra-MIR166b Bra-A04: 21244922-21245087 + Brassica rapa Bra-MIR166c Bra-A05: 682813-682983 -
SY-966 Bra-MIR166b Bra-A04: 21244922-21245087 + Brassica rapa Bra-MIR166f Bra-A09: 37793849-37794001 +
SY-967 Bra-MIR166b Bra-A04: 21244922-21245087 + Capsella rubella Cru-MIR166a Cru-scaffold_4: 14490144-14490324 +
SY-968 Bra-MIR166b Bra-A04: 21244922-21245087 + Eutrema salsugineum Esa-MIR166a Esa-scaffold_22: 1329544-1329726 +
SY-969 Bra-MIR166b Bra-A04: 21244922-21245087 + Eutrema salsugineum Esa-MIR166d Esa-scaffold_19: 528598-528750 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.F00211.1 0.5 NA NA
Brara.H00179.1 0.5 NA NA
Brara.B01017.1 1.0 NA NA
Brara.D02105.1 1.0 NA NA
Brara.I02808.1 1.0 NA NA
Brara.J01422.1 1.0 NA NA
Brara.K00217.1 1.0 NA NA
Brara.E00955.1 1.5 NA NA
Brara.F01856.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference