Bra-MIR169o

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 --    T     G    G   -     A    T    T     CGT  -TA     TCTC            AATAAA
A  AGAA GAGAA TTGT TGG TAGCC AGGA GACT GCCTG   CT   AACCA    TATCAAAGACTA      
|  |||| ||||| |||| ||| ||||| |||| |||| |||||   ||   |||||    ||||||||||||       
T  TCTT CTCTT AACA ACT ATCGG TCCT CTGA CGGAT   GA   TTGGT    ATAGTTTCTGAT      
 CC    T     -    G   T     C    -    -     --T  TAA     -TAA            AGCTAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-212 Aly-MIR169h Aly-scaffold_1: 8198500-8198645 - Brassica rapa Bra-MIR169o Bra-A09: 40392906-40393053 +
SY-571 Ath-MIR169h Ath-Chr1: 6695442-6695584 - Brassica rapa Bra-MIR169o Bra-A09: 40392906-40393053 +
SY-1031 Bra-MIR169n Bra-A06: 7754638-7754773 - Brassica rapa Bra-MIR169o Bra-A09: 40392906-40393053 +
SY-1040 Bra-MIR169x Bra-A08: 20152692-20152834 + Brassica rapa Bra-MIR169o Bra-A09: 40392906-40393053 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03216.1 1.0 1 NA
Brara.B02046.1 1.0 NA NA
Brara.E01518.1 1.0 1 NA
Brara.F00066.1 1.0 NA NA
Brara.G03156.1 1.0 1 NA
Brara.H00096.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference