Cru-MIR160b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
T G       ----   A A       C     - C           A  AAAAC         TAG
 A ATCAGGA    TTT G GTCGTGC TGGCT C CTGTATGCCAC AG     ATCGATTTT   
 | |||||||    ||| | ||||||| ||||| | ||||||||||| ||     |||||||||   T
 T TAGTTCT    GAA C CAGTACG ACTGA G GACATGCGGTG TC     TAGCTAAGA   
  A       TTTC   A -       A     T A           A  ---AC         CAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-74 Aly-MIR160b Aly-scaffold_7: 11280818-11280940 - Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-458 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-745 Bol-MIR160b Bol-C01: 6058533-6058655 + Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-749 Bol-MIR160c Bol-C07: 39151232-39151354 + Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-933 Bra-MIR160b Bra-A01: 4672672-4672794 + Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-938 Bra-MIR160f Bra-Scaffold18850: 482412-482534 - Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-941 Bra-MIR160g Bra-A08: 11071954-11072076 - Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-1212 Cru-MIR160b Cru-scaffold_7: 8935803-8935927 - Eutrema salsugineum Esa-MIR160b Esa-scaffold_1: 9864399-9864521 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0002s2474.1 0.5 NA NA
Carub.0004s0926.1 1.0 NA NA
Carub.0007s1052.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference