Cru-MIR166e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
         TTTTCTCTT            TT      CA   G C T      --C     -TA     T  AT       TTTT           CTCTCTT  TTAT
    GAAGC         TTGAGGGGAATG  GTCTGG  CGA G C TTAACT   AGATC   CGTTT TG  TATATAT    ATATATATGTA       CT    
    |||||         ||||||||||||  ||||||  ||| | | ||||||   |||||   ||||| ||  |||||||    |||||||||||       ||    T
    TTTCG         AACTCCCCTTAC  CGGACC  GCT C G AATTGG   TCTAG   GTAAG AT  ATATATG    TATATATACAT       GA    
CTAG     --CTACATT            TT      AG   G A T      TAA     CTA     T  GT       ----           ATCTTCT  TTAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-137 Aly-MIR166e Aly-scaffold_7: 21195594-21195766 + Capsella rubella Cru-MIR166e Cru-scaffold_7: 15274115-15274322 +
SY-513 Ath-MIR166e Ath-Chr5: 16775504-16775676 - Capsella rubella Cru-MIR166e Cru-scaffold_7: 15274115-15274322 +
SY-963 Bra-MIR166a Bra-A04: 11059701-11059852 + Capsella rubella Cru-MIR166e Cru-scaffold_7: 15274115-15274322 +
SY-975 Bra-MIR166e Bra-A07: 15385796-15385945 - Capsella rubella Cru-MIR166e Cru-scaffold_7: 15274115-15274322 +
SY-1221 Cru-MIR166e Cru-scaffold_7: 15274115-15274322 + Eutrema salsugineum Esa-MIR166c Esa-scaffold_14: 2294318-2294494 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0005s2865.1 0.0 0 NA
Carub.0001s4109.1 0.5 NA NA
Carub.0001s2871.1 1.0 NA NA
Carub.0004s1640.1 1.0 NA NA
Carub.0007s0761.1 1.0 NA NA
Carub.0008s2137.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference