Cru-MIR172d

Basic info.

• miRNA locus ID
• Cru-MIR172d

• miRNA locus accession
• PmiREN002780

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_6  1174066  1174194  -

• Comments
• A member of family MIR172

• Confidence level
• 

Secondary strurture and sequence

  ATCA       T    A         C           A    A A  -TGAA     T    A
      GCCGTTG TTGT GGTGCAGCA CATCAAGATTC CATG G AT     AAAAC CCTA 
      ||||||| |||| ||||||||| ||||||||||| |||| | ||     ||||| |||| A
      CGGCAGC AACA CTACGTCGT GTAGTTCTAAG GTAT C TG     TTTTG GGAT 
AAACAT       C    A         A           A    A A  TATAG     -    T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference