Cru-MIR172e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 ATC     -   GTC  A         C           A  AGA  TGT  TT      G      CCCCT
    AGCCA GTA   GC GATGCAGCA CATTAAGATTC CA   GA   GG  CCCTTT TTTTCA     
    ||||| |||   || ||||||||| ||||||||||| ||   ||   ||  |||||| ||||||      
    TCGGT CAT   CG CTACGTCGT GTAGTTCTAAG GT   CT   CC  GGGAAA AGAAGT     
ATCA     A   AAA  A         A           G  GAG  TTT  TT      -      CTAGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-253 Aly-MIR172e Aly-scaffold_8: 19150529-19150670 + Capsella rubella Cru-MIR172e Cru-scaffold_8: 10226143-10226285 +
SY-609 Ath-MIR172e Ath-Chr5: 23988464-23988606 + Capsella rubella Cru-MIR172e Cru-scaffold_8: 10226143-10226285 +
SY-1065 Bra-MIR172d Bra-A03: 5107913-5108027 - Capsella rubella Cru-MIR172e Cru-scaffold_8: 10226143-10226285 +
SY-1074 Bra-MIR172h Bra-A02: 5458096-5458238 - Capsella rubella Cru-MIR172e Cru-scaffold_8: 10226143-10226285 +
SY-1077 Bra-MIR172j Bra-A10: 11990338-11990457 + Capsella rubella Cru-MIR172e Cru-scaffold_8: 10226143-10226285 +
SY-1239 Cru-MIR172e Cru-scaffold_8: 10226143-10226285 + Eutrema salsugineum Esa-MIR172b Esa-scaffold_2: 8433222-8433365 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0005s2161.1 0.5 NA NA
Carub.0004s0952.1 1.0 NA NA
Carub.0004s2130.1 1.0 NA NA
Carub.0007s0310.1 1.0 0 NA
Carub.0008s2084.1 1.0 NA NA
Carub.0008s2733.1 1.0 0 NA
Carub.0005s1326.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference