Cru-MIR319a

Basic info.

• miRNA locus ID
• Cru-MIR319a

• miRNA locus accession
• PmiREN002784

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_4  12176944  12177161  +

• Comments
• A member of family MIR319

• Confidence level
• 

Secondary strurture and sequence

  AAAACAGA    TAC        A              T        GACA      A  G           G   AC    C   C  AA    C     AG    AAGA
          TAGA   AGAAGGAG TTCTTTCAGTCCAG CATGGATA    AAGAAG GG TAGAAATATCT CCG  TCAT CAT CA  CACT GTGGT  AAAA    
          ||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  ||||     
          ATCT   TCTTCCTC AGGGAAGTCAGGTT GTGTCTAT    TTCTTC CT GTTTTTATAGA GGC  AGTA GTG GT  GTGA CGCCA  TTTT    
TCTTTTTAAC    TTT        G              T        ----      -  A           G   GT    A   T  CA    -     AA    AGAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Microsynteny analysis to understand evolution and impact of polyploidization on MIR319 family within Brassicaceae. Dev Genes Evol, 2018
• >Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Mol Biol Evol, 2008