Cru-MIR396a

Basic info.

• miRNA locus ID
• Cru-MIR396a

• miRNA locus accession
• PmiREN002804

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_3  10624783  10624945  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  CAA    -  TC        C            C           --CACT  -TT     T   TT  --T     --T   TT
     TGAC CT  TCTGTATT TTCCACAGCTTT TTGAACTGCAA      TC   CAGAT TGT  TG   TTATT   GCC  
     |||| ||  |||||||| |||||||||||| |||||||||||      ||   ||||| |||  ||   |||||   |||   
     ACTG GA  AGACATAG AGGGTGTCGAAA AACTTGGCGTT      AG   GTCTA ACA  AT   AGTGA   TGG  
GATAA    A  -C        A            T           TTAGTT  CTC     C   TT  TTT     TAT   TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference