Cru-MIR408

Basic info.

• miRNA locus ID
• Cru-MIR408

• miRNA locus accession
• PmiREN002817

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_4  14640170  14640296  +

• Comments
• A member of family MIR408

• Confidence level
• 

Secondary strurture and sequence

        C    T  TAAT    TAGA       CAA    A      ATT   TTT  T       TATA
         AAAG GG    GAGA    CAGGGAA   GCAG GCATGG   GAG   AC AAAACAC    
         |||| ||    ||||    |||||||   |||| ||||||   |||   || |||||||    C
         TTTC CC    CTCT    GTCCCTT   CGTC CGTACC   CTC   TG TTTTGTG    
TTATCTCTC    T  ----    --CG       CTC    A      CAT   ---  -       TCAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference