PmiREN: Plant microRNA Encyclopedia

Esa-MIR157a

Basic info.

miRNA locus ID
Esa-MIR157a

miRNA locus accession
PmiREN005592

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_13 3051829 3052046 +

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTTGA   T     --T   T  T        -           TAAGGATGAC    AAGTGCATACATATATTTATCATCACACCGCATGTACGTGGATGATAAAATATGTTAA
     GAA GATGT   GGT GT GACAGAAG ATAGAGAGCAC          ATGC                                                          
     ||| |||||   ||| || |||||||| |||||||||||          ||||                                                           
     CTT TTATA   CCA CA CTGTCTTC TATCTCTCGTG          TTTT                                                          
TTCTC   C     TTT   C  -        A           ----------    CTCATCTCTACGTCCGAGAAAAAGAGAGACGAAGAGGGAGAGAGAGAGAACTTATACA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-47	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-55	Aly-MIR157d	Aly-scaffold_1: 24813797-24814014 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-430	Ath-MIR157c	Ath-Chr3: 6244507-6244713 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-434	Ath-MIR157d	Ath-Chr1: 18026817-18027028 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-723	Bol-MIR157	Bol-C01: 31679965-31680103 +	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-912	Bra-MIR157a	Bra-A03: 18966005-18966200 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-916	Bra-MIR157b	Bra-A01: 25099108-25099295 +	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-1204	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-1206	Cru-MIR157b	Cru-scaffold_3: 6365381-6365595 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10003215m	1.5	1	NA
Thhalv10006058m	1.5	1	NA
Thhalv10007832m	1.5	1	NA
Thhalv10007882m	1.5	1	NA
Thhalv10009488m	1.5	1	NA
Thhalv10016816m	1.5	1	NA
Thhalv10018638m	2.0	1	NA

Mature miRNA conservation

Link

No link
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Reference

No reference

Esa-MIR157a

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