PmiREN: Plant microRNA Encyclopedia

Esa-MIR159b

Basic info.

miRNA locus ID
Esa-MIR159b

miRNA locus accession
PmiREN005599

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_9 3074879 3075095 +

Comments
A member of family MIR159

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GAA   A    A     ------            AA        C      -TT   ------       AGA      G  A  C    G TC     AGC        GTATAA
   AGA AAAG TGGAA      GTAGAGCTCCTT  AGTTCAAA GAGAGT   AGT      AGGGTAA   AAAGCT CT AG TATG A  CCATA   CCTAATCC      
   ||| |||| |||||      ||||||||||||  |||||||| ||||||   |||      |||||||   |||||| || || |||| |  |||||   ||||||||       
   TCT TTTC ACCTT      CATCTCGAGGGA  TTAGGTTT TTCTCA   TCG      TCCCGTT   TTTCGA GA TC ATAC T  GGTAT   GGATTAGG      
      A    -     CTTCTA            AG        C      TTT   GTAATT       CAA      G  C  T    G TC     CTT        AAAAGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-66	Aly-MIR159a	Aly-scaffold_2: 15958622-15958842 -	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-442	Ath-MIR159a	Ath-Chr1: 27713214-27713433 -	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-447	Ath-MIR159b	Ath-Chr1: 6220630-6220853 +	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-730	Bol-MIR159a	Bol-C02: 16850346-16850562 -	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-734	Bol-MIR159b	Bol-C06: 33256920-33257135 +	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-740	Bol-MIR159c	Bol-C06: 3552444-3552661 +	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-925	Bra-MIR159a	Bra-A07: 19765886-19766103 +	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-928	Bra-MIR159b	Bra-A02: 12875495-12875712 -	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-931	Bra-MIR159d	Bra-A07: 24993751-24993975 +	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-1209	Cru-MIR159a	Cru-scaffold_1: 6244044-6244271 +	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +
SY-1210	Cru-MIR159b	Cru-scaffold_2: 11281838-11282056 -	Eutrema salsugineum	Esa-MIR159b	Esa-scaffold_9: 3074879-3075095 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10025350m	1.5	1	NA
Thhalv10006475m	2.0	1	NA
Thhalv10013018m	2.0	NA	NA
Thhalv10020864m	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR159b

>