Esa-MIR166g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 A     -TATTTCC             TT      A    G   A    -C      A      ---         AG
  GAGGC        GTTGAGGGGAATG  GTTTGG TCGA GAT TCAT  ATATGC TACGTA   TAATATCGT  
  |||||        |||||||||||||  |||||| |||| ||| ||||  |||||| ||||||   |||||||||   
  TTCCG        CAACTCTCCTTAC  CGGACC GGCT CTA GGTA  TATATG ATGTAT   ATTATAGCG  
AA     TTATTCTA             TT      A    G   A    TC      G      AAC         TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-109 Aly-MIR165b Aly-scaffold_6: 24606423-24606600 + Eutrema salsugineum Esa-MIR166g Esa-scaffold_3: 546347-546498 +
SY-493 Ath-MIR165b Ath-Chr4: 369836-370009 - Eutrema salsugineum Esa-MIR166g Esa-scaffold_3: 546347-546498 +
SY-774 Bol-MIR165c Bol-C09: 468121-468250 + Eutrema salsugineum Esa-MIR166g Esa-scaffold_3: 546347-546498 +
SY-960 Bra-MIR165c Bra-A09: 449472-449636 - Eutrema salsugineum Esa-MIR166g Esa-scaffold_3: 546347-546498 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10011238m 0.5 NA NA
Thhalv10006792m 1.0 NA NA
Thhalv10012678m 1.0 NA NA
Thhalv10016241m 1.0 NA NA
Thhalv10024403m 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference