PmiREN: Plant microRNA Encyclopedia

Esa-MIR167b

Basic info.

miRNA locus ID
Esa-MIR167b

miRNA locus accession
PmiREN005618

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_13 868555 868695 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TATA    AC   -  T T A         C            ATA      ---    ---  C      TT
     GTGC  CGG CA C G TGAAGCTGC AGCATGATCTAA   ACTTTC   TTTC   TC GTTGTT  
     ||||  ||| || | | ||||||||| ||||||||||||   ||||||   ||||   || ||||||  C
     CACG  GTC GT G C ACTTTGACG TTGTACTAGATT   TGAGAG   AGAG   AG TAGCAG  
AGTCC    CT   A  T C C         C            AAA      TAC    AAA  T      TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-157	Aly-MIR167a	Aly-scaffold_3: 10278868-10279012 +	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-529	Ath-MIR167a	Ath-Chr3: 8108070-8108212 +	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-801	Bol-MIR167a	Bol-C01: 27616766-27616904 -	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-806	Bol-MIR167b	Bol-C04: 13166957-13167087 +	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-984	Bra-MIR167a	Bra-A03: 20192957-20193097 +	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-988	Bra-MIR167b	Bra-A01: 22755371-22755509 -	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-991	Bra-MIR167d	Bra-A05: 17920465-17920595 -	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -
SY-1224	Cru-MIR167a	Cru-scaffold_3: 8330159-8330311 +	Eutrema salsugineum	Esa-MIR167b	Esa-scaffold_13: 868555-868695 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10011887m	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR167b

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