Esa-MIR319a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AATA          ------TT        A              T          AAAT  A A   T          G   AC    C   T  AA    C     GA    ACAAC
    TAAGATAGAT        AGAAGGAG TTCTTTCAGTCCAG CATGGATAGA    GA G GTG AGAAATATCT CCG  TCAT CAC CA  CACT GTGGT  AAAA     
    ||||||||||        |||||||| |||||||||||||| ||||||||||    || | ||| |||||||||| |||  |||| ||| ||  |||| |||||  ||||     C
    GTTTTATTTA        TCTTCCTC AGGGAAGTCAGGTT GTGTCTATTT    CT C TAC TTTTTATAGA GGC  AGTA GTG GT  GTGA CGCCA  TTTT     
              CATCTCTT        G              T          ----  C C   -          G   GT    A   T  CA    -     AA    AAATA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-629 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +
SY-1098 Bra-MIR319f Bra-A03: 10438625-10438847 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +
SY-1101 Bra-MIR319g Bra-A04: 19600737-19600957 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +
SY-1103 Bra-MIR319h Bra-A05: 1061830-1062044 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +
SY-1240 Cru-MIR319a Cru-scaffold_4: 12176944-12177161 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10002011m 1.5 1 NA
Thhalv10013329m 1.5 1 NA
Thhalv10020455m 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference