Esa-MIR396a

Basic info.

• miRNA locus ID
• Esa-MIR396a

• miRNA locus accession
• PmiREN005655

• Organism
• Eutrema salsugineum

• Genomic location
• Esa-scaffold_11  11322331  11322501  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  ACA       CTC      C            C             TTTTTAATATTGGTTTTATCTCATAAATCTATTTGCAT
     TGACTCT   TGTATT TTCCACAGCTTT TTGAACTGCAACC                                      
     |||||||   |||||| |||||||||||| |||||||||||||                                      A
     ACTGAGA   ACATAG AGGGTGTCGAAA AACTTGACGTTTA                                      
AGTTC       CAT      A            T             GCTAGCATGTCTACGCTAGATTTAATTTTAGTGATAAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference