PmiREN: Plant microRNA Encyclopedia

Mac-MIR169i

Basic info.

miRNA locus ID
Mac-MIR169i

miRNA locus accession
PmiREN012103

Organism
Musa acuminata

Genomic location
Mac-chr8 864023 864152 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    A     A   CAT   -T            T    T   G   TCCT  -TTTA    TT     GC
   A ATAAG GTC   CTT  GGTAGCCAAGGA GACT GCC GTG    CC     GGTC  GTCTG  
   | ||||| |||   |||  |||||||||||| |||| ||| |||    ||     ||||  |||||   
   T TATTT CAG   GAA  TCATCGGTTCCT CTGA CGG CAC    GG     CCAG  CAGAC  
CTC C     C   --T   TC            -    -   A   -TTC  TGTTA    --     TT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3815
Chromosome: Mac-chr8
Cluster start: 857740
Cluster end: 864152

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR169i , Mac-MIR169p	PmiREN012103, PmiREN012110	Mac-chr8	-	857740	864152

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr8T16690_001	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Identification and characterization of miRNA169 family members in banana (Musa acuminata L.) that respond to fusarium oxysporum f. sp. cubense infection in banana cultivars. PeerJ, 2018