PmiREN: Plant microRNA Encyclopedia

Mac-MIR169p

Basic info.

miRNA locus ID
Mac-MIR169p

miRNA locus accession
PmiREN012110

Organism
Musa acuminata

Genomic location
Mac-chr8 857740 857867 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

        A     CAT   -  G          T    T       TCC   -T     C   A   GC
   AGATA GAGTC   CTT TG TAGCCAAGGA GACT GCCTGTG   TCC  GATGG TTT CTG  
   ||||| |||||   ||| || |||||||||| |||| |||||||   |||  ||||| ||| |||   
   TCTAT TTCAG   GAA AT ATCGGTTCCT CTGA CGGACAC   AGG  TTACC AAA GAC  
CAG     C     --T   T  G          -    -       -TT   TT     -   -   TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3815
Chromosome: Mac-chr8
Cluster start: 857740
Cluster end: 864152

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR169i , Mac-MIR169p	PmiREN012103, PmiREN012110	Mac-chr8	-	857740	864152

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr8T16690_001	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Identification and characterization of miRNA169 family members in banana (Musa acuminata L.) that respond to fusarium oxysporum f. sp. cubense infection in banana cultivars. PeerJ, 2018