PmiREN: Plant microRNA Encyclopedia

Mac-MIR169j

Basic info.

miRNA locus ID
Mac-MIR169j

miRNA locus accession
PmiREN012104

Organism
Musa acuminata

Genomic location
Mac-chr9 28042488 28042609 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  A   T         G  A  C            -          -TAA  -  -     AGA
   AGA GAAGAGAGT GA TG AGCCAAGGATGA CTTGCCGGCA    GC TG GAAGA   
   ||| ||||||||| || || |||||||||||| ||||||||||    || || |||||    
   TCT CTTCTCTCG TT AC TCGGTTCCTGTT GAACGGCTGT    CG AC CTTCT   
TAC   T         G  C  A            T          TGAA  T  A     CTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3817
Chromosome: Mac-chr9
Cluster start: 28037965
Cluster end: 28042609

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR169j , Mac-MIR169k	PmiREN012104, PmiREN012105	Mac-chr9	-	28037965	28042609

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr8T16690_001	2.0	NA	NA
GSMUA_Achr8T28000_001	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Identification and characterization of miRNA169 family members in banana (Musa acuminata L.) that respond to fusarium oxysporum f. sp. cubense infection in banana cultivars. PeerJ, 2018