PmiREN: Plant microRNA Encyclopedia

Mac-MIR169k

Basic info.

miRNA locus ID
Mac-MIR169k

miRNA locus accession
PmiREN012105

Organism
Musa acuminata

Genomic location
Mac-chr9 28037965 28038085 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    A  T            A  C            -          - A   T -    AAGA
   A GA GCAGAGAGTCGA TG AGCCAAGGATGA CTTGCCGACA C TGC G GAAG    
   | || |||||||||||| || |||||||||||| |||||||||| | ||| | ||||     
   T CT CGTCTCTCGGTT AC TCGGTTCCTGTT GAACGGTTGT G ACG C CTTC    
TAC -  T            C  A            T          T A   T A    CGTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3817
Chromosome: Mac-chr9
Cluster start: 28037965
Cluster end: 28042609

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR169j , Mac-MIR169k	PmiREN012104, PmiREN012105	Mac-chr9	-	28037965	28042609

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr8T16690_001	2.0	NA	NA
GSMUA_Achr8T28000_001	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Identification and characterization of miRNA169 family members in banana (Musa acuminata L.) that respond to fusarium oxysporum f. sp. cubense infection in banana cultivars. PeerJ, 2018