Mac-MIR396b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    AC   T  A  A       C       G            G  A     -   TG  TCCACCCTT          T CTC  GA
      AAG TC TG TCATGTT TTCCACG CTTTCTTGAACT TG GCTGG TGT  CT         TCCTCGTTGC C   GA  
      ||| || || ||||||| ||||||| |||||||||||| || ||||| |||  ||         |||||||||| |   ||   
      TTC AG AC AGTACAA AGGGTGT GAAAGAACTTGA AC CGACC ACA  GA         AGGAGCAGCG G   CT  
CAGATT   T  -  -       A       A            A  G     T   CA  ---------          T TCA  AG

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mac-MIR396b ,   Mac-MIR396c PmiREN012184, PmiREN012185 Mac-chr1 - 13244851 13247528

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr5T08040_001 4.5 NA 2 (1)
GSMUA_Achr1T02370_001 1.5 1 NA
GSMUA_Achr6T31010_001 1.5 1 NA
GSMUA_Achr10T25680_001 2.0 NA NA
GSMUA_Achr2T06220_001 2.0 NA NA
GSMUA_Achr7T00440_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference