Mac-MIR396c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    GC      G  GA    C       A                G   -----  T    GG         G      --TGA     ----      --C   GAA
      AAGATC TG  CATG TTTCCAC GGCTTTCTTGAACTGT AAC     TC CCGT  TCCTTTTTC CTTCCT     TCCTT    TCTTCC   GAG   
      |||||| ||  |||| ||||||| |||||||||||||||| |||     || ||||  ||||||||| ||||||     |||||    ||||||   |||    
      TTCTAG AC  GTGC AAAGGTG CCGAAAGAACTTGATA TTG     AG GGTA  GGGAGGAGG GGAGGA     AGGAG    AGAAGG   CTC   
GAGCCT      -  -A    C       C                G   CCGCC  T    -G         A      TGAGG     AAGA      AAC   AAG

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mac-MIR396b ,   Mac-MIR396c PmiREN012184, PmiREN012185 Mac-chr1 - 13244851 13247528

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr10T06370_001 0.0 0 NA
GSMUA_Achr1T21940_001 0.0 0 NA
GSMUA_Achr1T23840_001 0.0 0 NA
GSMUA_Achr2T04650_001 0.0 0 NA
GSMUA_Achr6T01270_001 0.0 0 NA
GSMUA_Achr8T30640_001 0.0 0 NA
GSMUA_AchrUn_randomT04320_001 0.0 0 NA
GSMUA_Achr11T21590_001 1.5 1 NA
GSMUA_Achr1T27000_001 1.5 1 NA
GSMUA_Achr3T15140_001 1.5 2 NA
GSMUA_Achr3T22790_001 1.5 2 NA
GSMUA_Achr4T32310_001 1.5 1 NA
GSMUA_Achr5T20170_001 1.5 NA NA
GSMUA_Achr7T27480_001 1.5 NA NA
GSMUA_Achr8T04970_001 1.5 2 NA
GSMUA_Achr8T26530_001 1.5 NA NA
GSMUA_AchrUn_randomT15490_001 1.5 2 NA
GSMUA_Achr11T01870_001 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference