Pha-MIR169h

Basic info.

• miRNA locus ID
• Pha-MIR169h

• miRNA locus accession
• PmiREN016228

• Organism
• Panicum hallii

• Genomic location
• Pha-Chr03  3561253  3561394  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

     C ATGT    CC  T   T                 T   TATC     T    G         C   GA
    G G    AGAG  TC CTC CTTAGCCAAGAATGGCT GCC    TCTAC ATTT GTCCATTAT AGG  
    | |    ||||  || ||| ||||||||||||||||| |||    ||||| |||| ||||||||| |||   
    C C    TCTC  AG GAG GAATCGGTTCTTACTGG CGG    AGGTG TAAA TAGGTAGTA TCC  
GTAC A --CT    TT  T   C                 -   TACT     -    G         C   CG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3952
• Chromosome: Pha-Chr03
• Cluster start: 3561253
• Cluster end: 3568048

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference