Sit-MIR156f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        -   AGG   A          -     -               GCCT    T      TGGATG
 GTGGGAG GAG   TGG GGCTGACAGA AGAGA GTGAGCACACATGGT    TTCT GCATGG      
 ||||||| |||   ||| |||||||||| ||||| |||||||||||||||    |||| ||||||      A
 CACTCTC CTC   ATT CCGGCTGTCT TCTCT CACTCGTGTGTATCG    AAGG CGTACT      
A       T   AAG   A          C     T               ----    T      TGAGAG

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Sit-MIR156f ,   Sit-MIR156g PmiREN018616, PmiREN018617 Sit-scaffold_5 + 11531652 11532174

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.1G069300.1 1.0 1 NA
Seita.1G091900.1 1.0 NA NA
Seita.2G254300.1 1.0 NA NA
Seita.2G266500.1 1.0 NA NA
Seita.2G324900.1 1.0 1 NA
Seita.2G325000.1 1.0 1 NA
Seita.4G270400.1 1.0 NA NA
Seita.5G432500.1 1.0 NA NA
Seita.6G205500.1 1.0 NA NA
Seita.6G223300.1 1.0 NA NA
Seita.7G190000.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference