Sit-MIR166a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTGG       ------               TT G    C    G  A  -  ---C    --    TT    AT
    TCATGGG      GGCTTGTGGGGAATG  G CTGG TCGA GC TC CG    GTCC  TAGC  GCAG  
    |||||||      |||||||||||||||  | |||| |||| || || ||    ||||  ||||  ||||   
    GGTACCT      CCGAACGCTCCTTAC  C GACC GGCT CG AG GC    CAGG  GTCG  CGTT  
           ATGTTA               TT G    A    G  G  A  TAGA    CC    TC    GC

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Sit-MIR166a ,   Sit-MIR166b PmiREN018634, PmiREN018635 Sit-scaffold_1 - 39203068 39203436

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.9G529300.1 0.0 NA NA
Seita.3G395000.1 1.0 NA NA
Seita.5G141300.1 1.0 NA NA
Seita.9G158800.1 1.0 NA NA
Seita.9G219700.1 1.0 NA NA
Seita.9G572600.1 1.0 NA NA
Seita.5G028400.1 2.0 NA NA
Seita.9G201600.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference