PmiREN: Plant microRNA Encyclopedia

Spo-MIR156b

Basic info.

miRNA locus ID
Spo-MIR156b

miRNA locus accession
PmiREN020138

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo0 7606866 7606990 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    G   TCG G     TAA           -    -        C A   --     T    CAA
     GCG   A TGCCG   GGCTGACAGAA GAGA GTGAGCAC C CCG  GCGAC GCAT   
     |||   | |||||   ||||||||||| |||| |||||||| | |||  ||||| ||||   G
     CGT   T ATGGT   TCGACTGTCTT CTCT CACTCGTG G GGC  TGCTG CGTA   
GGTCA   -TG G     -CC           T    T        C C   AC     C    TCG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 4176
Chromosome: Spo-pseudo0
Cluster start: 7606866
Cluster end: 7610083

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Spo-MIR156a , Spo-MIR156b	PmiREN020137, PmiREN020138	Spo-pseudo0	+	7606866	7610083

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo10G0020600	1.0	1	NA
Spipo12G0064300	1.0	1	NA
Spipo13G0025100	1.0	1	NA
Spipo1G0082600	1.0	1	NA
Spipo4G0054600	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Post-transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli. Plant J, 2019