Spo-MIR167a

Basic info.

• miRNA locus ID
• Spo-MIR167a

• miRNA locus accession
• PmiREN020148

• Organism
• Spirodela polyrhiza

• Genomic location
• Spo-pseudo2  1597363  1597502  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

AAG     -- - -T     AC     A     - -              AT       -A    --GAAC  TA
   GTGCC  C C  GGGAA  AGTGA GCTGC C AGCATGATCTAGCC  CGTTGAC  ATAT      CC  
   |||||  | |  |||||  ||||| ||||| | ||||||||||||||  |||||||  ||||      ||  A
   CACGG  G G  CCCTT  TCACT CGACG G TCGTACTGGATTGG  GCAACTG  TATG      GG  
  A     AA C TC     CC     C     C C              AT       AC    ATGAAA  TC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 4179
• Chromosome: Spo-pseudo2
• Cluster start: 1597363
• Cluster end: 1602079

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference