Aly-MIR156b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  A  T    C   --GAA           -     -       A    G  TCT      TG
GA AA GCAA AGA     AACTGACAGAA GAGAG TGAGCAC TGCA GC   GTTATG  
|| || |||| |||     ||||||||||| ||||| ||||||| |||| ||   ||||||   
CT TT TGTT TCT     TTGACTGTCTT CTCTC ACTCGTG GTGT CG   CAATAT  
  A  T    C   ATTCG           T     C       C    G  TTT      CT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-10 Aly-MIR156b Aly-scaffold_7: 4534112-4534233 - Arabidopsis thaliana Ath-MIR156b Ath-Chr4: 15074925-15075046 +
SY-11 Aly-MIR156b Aly-scaffold_7: 4534112-4534233 - Brassica oleracea Bol-MIR156 Bol-C03: 54389745-54389867 -
SY-12 Aly-MIR156b Aly-scaffold_7: 4534112-4534233 - Brassica rapa Bra-MIR156e Bra-A08: 14748884-14749006 -
SY-13 Aly-MIR156b Aly-scaffold_7: 4534112-4534233 - Brassica rapa Bra-MIR156k Bra-A01: 3266796-3266917 -
SY-14 Aly-MIR156b Aly-scaffold_7: 4534112-4534233 - Brassica rapa Bra-MIR156t Bra-Scaffold19799: 61328-61449 -
SY-15 Aly-MIR156b Aly-scaffold_7: 4534112-4534233 - Eutrema salsugineum Esa-MIR156e Esa-scaffold_1: 3805364-3805485 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G29580.t1 0.5 0 NA
AL1G40760.t1 1.0 NA NA
AL1G40770.t1 1.0 NA NA
AL1G61520.t1 1.0 1 NA
AL2G28260.t1 1.0 1 NA
AL8G17210.t1 1.0 1 NA
AL8G24830.t1 1.0 1 NA
AL8G31390.t1 1.5 NA NA
AL3G27660.t1 2.0 1 NA
AL4G40560.t1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference