Aly-MIR156c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TAAGA   A  -CATA    -        -    -         A   ---     CTT     GT
     GAA CG     GAAA CTGACAGA AGAG AGTGAGCAC CAA   AGGCA   TGCAT  
     ||| ||     |||| |||||||| |||| ||||||||| |||   |||||   |||||  T
     CTT GC     CTTT GACTGTCT TCTC TCACTCGTG GTT   TTCGT   ACGTA  
CTTGG   A  CTCGG    A        A    G         C   CTC     -TT     GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-16 Aly-MIR156c Aly-scaffold_7: 4138765-4138889 + Arabidopsis thaliana Ath-MIR156a Ath-Chr2: 10676450-10676573 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G29580.t1 0.5 0 NA
AL1G40760.t1 1.0 NA NA
AL1G40770.t1 1.0 NA NA
AL1G61520.t1 1.0 1 NA
AL2G28260.t1 1.0 1 NA
AL8G17210.t1 1.0 1 NA
AL8G24830.t1 1.0 1 NA
AL8G31390.t1 1.5 NA NA
AL3G27660.t1 2.0 1 NA
AL4G40560.t1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference