Aly-MIR156f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GATTGATGAGTAATTGAT         -                    GGCT   TT   TATT   TG
                    GGTGACAGA AGAGAGTGAGCACACATGGT    TTC  GCA    TGA  
                    ||||||||| ||||||||||||||||||||    |||  |||    |||  G
                    CCACTGTCT TCTCTCACTCGTGTGTATCG    AAG  CGT    ACT  
ATATATCTCTCTCTCTTCCC         A                    ----   TT   ----   TT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-27 Aly-MIR156f Aly-scaffold_6: 11884619-11884750 + Arabidopsis thaliana Ath-MIR156f Ath-Chr5: 9136106-9136237 +
SY-28 Aly-MIR156f Aly-scaffold_6: 11884619-11884750 + Brassica rapa Bra-MIR156q Bra-A06: 22782170-22782301 +
SY-29 Aly-MIR156f Aly-scaffold_6: 11884619-11884750 + Eutrema salsugineum Esa-MIR156i Esa-scaffold_6: 3821516-3821647 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G29580.t1 0.5 0 NA
AL1G40760.t1 1.0 NA NA
AL1G40770.t1 1.0 NA NA
AL1G61520.t1 1.0 1 NA
AL2G28260.t1 1.0 1 NA
AL8G17210.t1 1.0 1 NA
AL8G24830.t1 1.0 1 NA
AL8G31390.t1 1.5 NA NA
AL3G27660.t1 2.0 1 NA
AL4G40560.t1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference