Aly-MIR156g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   ATGAATAACAATA    A  C    -               A  T    CCTTT   T     GC
                AGGA GG GACA GAAGAGAGTGAGCAC CA GGCT     TTC AGCAT  
                |||| || |||| ||||||||||||||| || ||||     ||| |||||   
                TCCT CC CTGT CTTCTCTCATTCGTG GT TCGA     AAG TCGTA  
CTCTTTCTCTCTTTCG    -  T    T               C  C    -----   C     CT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-30 Aly-MIR156g Aly-scaffold_3: 21084424-21084549 + Arabidopsis thaliana Ath-MIR156g Ath-Chr2: 8412504-8412628 -
SY-31 Aly-MIR156g Aly-scaffold_3: 21084424-21084549 + Brassica rapa Bra-MIR156h Bra-A07: 1383762-1383887 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G29580.t1 1.5 1 NA
AL1G40760.t1 2.0 NA NA
AL1G40770.t1 2.0 NA NA
AL1G61520.t1 2.0 2 NA
AL2G28260.t1 2.0 1 NA
AL6G12420.t1 2.0 NA NA
AL8G17210.t1 2.0 1 NA
AL8G24830.t1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference