Aly-MIR156h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GAGAAGAAGATAAAGAA   T  A      -            -A     G TTA      AGA
                   ATG TG CAGAAG AAAGAGAGCACA  CCTGG A   GCAAAA   
                   ||| || |||||| ||||||||||||  ||||| |   ||||||    
                   TAC AC GTCTTC TTTCTCTCGTGT  GGGCT T   CGTTTT   
GTACCGCGATACGTGCTAC   C  C      C            GA     G TCC      GAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-32 Aly-MIR156h Aly-scaffold_8: 17184354-17184481 - Arabidopsis thaliana Ath-MIR156h Ath-Chr5: 22597000-22597127 -
SY-33 Aly-MIR156h Aly-scaffold_8: 17184354-17184481 - Brassica rapa Bra-MIR156g Bra-A10: 9965129-9965256 -
SY-34 Aly-MIR156h Aly-scaffold_8: 17184354-17184481 - Eutrema salsugineum Esa-MIR156a Esa-scaffold_2: 10225690-10225818 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL8G31390.t1 0.0 NA NA
AL1G40760.t1 1.5 NA NA
AL1G40770.t1 1.5 NA NA
AL8G17210.t1 1.5 0 NA
AL1G38680.t1 2.0 NA NA
AL1G38800.t1 2.0 NA NA
AL1G38860.t1 2.0 NA NA
AL2G28260.t1 2.0 1 NA
AL3G17390.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference