Aly-MIR157a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTTGA      -T      -  T         -A             T  -      A   TTC    CA
     GAGGCA  TGAGAG TG TGACAGAAG  TAGAGAGCACAGA GA TAAGAT CAA   GGAG  
     ||||||  |||||| || |||||||||  ||||||||||||| || |||||| |||   ||||   
     TTTCGT  ATTTTC AC ACTGTCTTC  ATCTCTCGTGTTT CT ATTCTA GTT   TCTT  
TCCTA      TT      C  T         CG             C  C      C   ---    TG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-35 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Arabidopsis thaliana Ath-MIR157a Ath-Chr1: 24913184-24913316 -
SY-36 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Brassica rapa Bra-MIR157c Bra-A02: 9519858-9519990 +
SY-37 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Brassica rapa Bra-MIR157d Bra-A07: 21853207-21853339 +
SY-38 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Capsella rubella Cru-MIR157c Cru-scaffold_2: 8184653-8184783 -
SY-39 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Eutrema salsugineum Esa-MIR157d Esa-scaffold_9: 9304808-9304939 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL1G40760.t1 1.5 NA NA
AL1G40770.t1 1.5 NA NA
AL4G45220.t1 1.5 1 NA
AL5G39570.t1 1.5 1 NA
AL8G17210.t1 1.5 1 NA
AL8G31390.t1 1.5 NA NA
AL2G28260.t1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference