PmiREN: Plant microRNA Encyclopedia

Aly-MIR157c

Basic info.

miRNA locus ID
Aly-MIR157c

miRNA locus accession
PmiREN000417

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_3 7799883 7800109 -

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTTGAGAGTGATGCT   T  T        -           TAAGGATGACATGCAAGCAC       -      - A  CCCCATGTGGATGATAAAATATGTATAACAAATTCAAGAAAGAG
                 GGT GT GACAGAAG ATAGAGAGCAC                    ATACATA TATCAT C CA                                            
                 ||| || |||||||| |||||||||||                    ||||||| |||||| | ||                                             
                 CCA CA CTGTCTTC TATCTCTCGTG                    TTTTCTC TCTCTA G TC                                            
TCTCTTCTTCTTTATTT   C  -        A           --------------------       A      C -  AGAGAAAGAGAGGGAGAGGGAGATGTAGACTAGAGAGAGAGAGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-40	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Arabidopsis thaliana	Ath-MIR157c	Ath-Chr3: 6244507-6244713 -
SY-41	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Arabidopsis thaliana	Ath-MIR157d	Ath-Chr1: 18026817-18027028 -
SY-42	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Brassica oleracea	Bol-MIR157	Bol-C01: 31679965-31680103 +
SY-43	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Brassica rapa	Bra-MIR157a	Bra-A03: 18966005-18966200 -
SY-44	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Brassica rapa	Bra-MIR157b	Bra-A01: 25099108-25099295 +
SY-45	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-46	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Capsella rubella	Cru-MIR157b	Cru-scaffold_3: 6365381-6365595 -
SY-47	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-48	Aly-MIR157d	Aly-scaffold_1: 24813797-24814014 -	Arabidopsis lyrata	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL1G40760.t1	1.5	NA	NA
AL1G40770.t1	1.5	NA	NA
AL4G45220.t1	1.5	1	NA
AL5G39570.t1	1.5	1	NA
AL8G17210.t1	1.5	1	NA
AL8G31390.t1	1.5	NA	NA
AL2G28260.t1	2.0	1	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR157c

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