Aly-MIR160a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
               TATATAT      C       C          AT  T   C       G
     GTATATGTAT       GTATGC TGGCTCC TGTATGCCAT  GC GAG TCATCGA 
     ||||||||||       |||||| ||||||| ||||||||||  || ||| ||||||| T
     TATATACATA       TATACG ACCGAGG GTATGCGGTA  TG CTC AGTAGCT 
ACATA          ---CTCC      T       A          GG  C   C       A

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-67 Aly-MIR160a Aly-scaffold_4: 18997262-18997382 + Brassica rapa Bra-MIR160c Bra-A03: 9900202-9900322 +
SY-68 Aly-MIR160a Aly-scaffold_4: 18997262-18997382 + Eutrema salsugineum Esa-MIR160a Esa-scaffold_10: 10128504-10128624 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL2G38080.t1 0.5 NA NA
AL4G21730.t1 1.0 NA NA
AL7G22120.t1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference