Aly-MIR160b

Basic info.

• miRNA locus ID
• Aly-MIR160b

• miRNA locus accession
• PmiREN000426

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_7  11280818  11280940  -

• Comments
• A member of family MIR160

• Confidence level
• 

Secondary strurture and sequence

  TATATATAGATTTAA        C     - C           A  AAAAC        AGT
                 GGTCGTGC TGGCT C CTGTATGCCAC AG     ATCGATTT   
                 |||||||| ||||| | ||||||||||| ||     ||||||||   T
                 CCAGTACG ACTGA G GACATGCGGTG TC     TAGCTAAA   
ATATAGTTCTTTCGAAA        A     T A           A  ---AC        ACA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference