Aly-MIR160c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     ATAATA      C TC       C       C          GA    ATA         T
           GTTTGT G  GTTATGC TGGCTCC TGTATGCCAC  GTGG   CCGATTTTG 
           |||||| |  ||||||| ||||||| ||||||||||  ||||   ||||||||| T
           CGAATA C  CAGTACG ACCGAGG ACATGCGGTG  CGTC   GGCTAAAAT 
TCAATAGTATA      - --       A       A          GC    ---         A

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-76 Aly-MIR160c Aly-scaffold_8: 677270-677391 + Arabidopsis thaliana Ath-MIR160c Ath-Chr5: 19009076-19009198 -
SY-77 Aly-MIR160c Aly-scaffold_8: 677270-677391 + Brassica rapa Bra-MIR160e Bra-A09: 14418668-14418789 -
SY-78 Aly-MIR160c Aly-scaffold_8: 677270-677391 + Capsella rubella Cru-MIR160c Cru-scaffold_8: 399218-399340 +
SY-79 Aly-MIR160c Aly-scaffold_8: 677270-677391 + Eutrema salsugineum Esa-MIR160c Esa-scaffold_20: 2068305-2068426 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL2G38080.t1 0.5 NA NA
AL4G21730.t1 1.0 NA NA
AL7G22120.t1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference