Aly-MIR161

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TAT     C   C      T            C         --   T         GC   -  CG    A
     TGTGT GAT AATGCA TGAAAGTGACTA ATCGGGGTT  TTG TTTTTTGTT  TCC CA  ATCG 
     ||||| ||| |||||| |||||||||||| |||||||||  ||| |||||||||  ||| ||  |||| A
     ACGTA CTA TTACGT ACTTTCACTGAT TGGCCCCAA  AAT AAAAAGTAG  AGG GT  TAGC 
TGTTT     A   A      C            T         CT   T         -A   A  -A    T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-80 Aly-MIR161 Aly-scaffold_1: 24491101-24491242 + Arabidopsis thaliana Ath-MIR161 Ath-Chr1: 17825711-17825840 +
SY-81 Aly-MIR161 Aly-scaffold_1: 24491101-24491242 + Capsella rubella Cru-MIR161 Cru-scaffold_1: 16494853-16494989 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL2G12470.t1 1.0 NA NA
AL2G12500.t1 1.0 NA NA
AL2G12790.t1 1.5 NA NA
AL2G13130.t1 1.5 NA NA
AL2G13140.t1 1.5 NA NA
AL2G13280.t1 1.5 NA NA
AL2G11830.t1 2.0 NA NA
AL2G12820.t1 2.0 NA NA
AL2G12830.t1 2.0 NA NA
AL7G48260.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference