PmiREN: Plant microRNA Encyclopedia

Aly-MIR162b

Basic info.

miRNA locus ID
Aly-MIR162b

miRNA locus accession
PmiREN000430

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_6 9808812 9808933 -

Comments
A member of family MIR162

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

          TTT       A T       G    C    C       A    C   GAATAT     TT
       GGA   AGAGTGA G CGCTGGA GCAG GGTT ATCGATC ATTC TGT      TTTTG  
       |||   ||||||| | ||||||| |||| |||| ||||||| |||| |||      |||||   
       CCT   TCTCATT C GCGACCT CGTC CCAA TAGCTAG TAAG ACG      AAAAC  
GTCTACT   ---       - -       A    T    A       C    T   ------     TT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-82	Aly-MIR162b	Aly-scaffold_6: 9808812-9808933 -	Arabidopsis thaliana	Ath-MIR162a	Ath-Chr5: 2634916-2635038 -
SY-83	Aly-MIR162b	Aly-scaffold_6: 9808812-9808933 -	Arabidopsis thaliana	Ath-MIR162b	Ath-Chr5: 7740590-7740715 -
SY-84	Aly-MIR162b	Aly-scaffold_6: 9808812-9808933 -	Brassica oleracea	Bol-MIR162	Bol-C07: 36847915-36848047 +
SY-85	Aly-MIR162b	Aly-scaffold_6: 9808812-9808933 -	Brassica rapa	Bra-MIR162a	Bra-A03: 22089695-22089829 +
SY-86	Aly-MIR162b	Aly-scaffold_6: 9808812-9808933 -	Eutrema salsugineum	Esa-MIR162b	Esa-scaffold_6: 2732097-2732235 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR162b

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