Aly-MIR164a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   GC    G  AAT   C            CA   C         C  ACAAAC   AA
     GGGT AG   CTC ATGTTGGAGAAG  GGG ACGTGCAAA CA      ACG  
     |||| ||   ||| ||||||||||||  ||| ||||||||| ||      |||  A
     CCCA TC   GAG TACAACCTCTTC  CTC TGCACGTTT GT      TGC  
AGTTA    G  CTC   -            CC   A         T  GTACTC   CT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-87 Aly-MIR164a Aly-scaffold_4: 23120157-23120273 + Arabidopsis thaliana Ath-MIR164a Ath-Chr2: 19520750-19520869 +
SY-88 Aly-MIR164a Aly-scaffold_4: 23120157-23120273 + Brassica rapa Bra-MIR164a Bra-A05: 199663-199779 -
SY-89 Aly-MIR164a Aly-scaffold_4: 23120157-23120273 + Brassica rapa Bra-MIR164e Bra-A04: 21524409-21524525 +
SY-90 Aly-MIR164a Aly-scaffold_4: 23120157-23120273 + Capsella rubella Cru-MIR164a Cru-scaffold_4: 14858719-14858835 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL6G18040.t1 0.5 1 NA
AL8G38110.t1 0.5 1 NA
AL1G64250.t1 1.0 1 NA
AL3G27560.t1 1.0 NA NA
AL8G29092.t1 1.0 1 NA
AL3G24670.t1 1.5 1 NA
AL7G50700.t1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference