Aly-MIR164c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAT   T   TA    T  A     A  C              CACA    A    G    GT
     GGG GAG  ACAC TG TGGAG AG AGGGCACGTGCGAA    AATG GATC ATCG  
     ||| |||  |||| || ||||| || ||||||||||||||    |||| |||| ||||  A
     CCC CTC  TGTG AC ACCTC TC TCTTGTGCACGCTT    TTAT CTAG TAGT  
CCCCT   C   TC    C  A     C  A              ----    A    -    AC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-96 Aly-MIR164c Aly-scaffold_6: 12607206-12607329 - Arabidopsis thaliana Ath-MIR164c Ath-Chr5: 9852664-9852787 +
SY-97 Aly-MIR164c Aly-scaffold_6: 12607206-12607329 - Capsella rubella Cru-MIR164b Cru-scaffold_6: 9492853-9492985 -
SY-98 Aly-MIR164c Aly-scaffold_6: 12607206-12607329 - Eutrema salsugineum Esa-MIR164a Esa-scaffold_6: 4116889-4117012 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL6G18040.t1 0.5 1 NA
AL8G38110.t1 0.5 1 NA
AL1G64250.t1 1.0 1 NA
AL3G27560.t1 1.0 NA NA
AL8G29092.t1 1.0 1 NA
AL3G24670.t1 1.5 1 NA
AL7G50700.t1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference