PmiREN: Plant microRNA Encyclopedia

Aly-MIR166a

Basic info.

miRNA locus ID
Aly-MIR166a

miRNA locus accession
PmiREN000436

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_4 22684208 22684381 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     A     TTTCT TT   A        TT      C    G   T    CTC      --   A   TGGATCTTTTTCGATCTAATAA
      GGGGT     C  TTG GGGGAATG  GTCTGG TCGA GAC CTGG   GCTCTA  TTC TGT                      
      |||||     |  ||| ||||||||  |||||| |||| ||| ||||   ||||||  ||| |||                      T
      CCTCG     G  AAC CCCCTTAC  CGGACC GGCT CTG GATT   TGGGAT  GTC TAG                      
TTTAGC     ---TT TT   C        TT      A    G   C    --T      CA   -   ACTTTAGACCTCCAAGTTAAGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-110	Aly-MIR166a	Aly-scaffold_4: 22684208-22684381 +	Arabidopsis thaliana	Ath-MIR166b	Ath-Chr3: 22922192-22922341 +
SY-111	Aly-MIR166a	Aly-scaffold_4: 22684208-22684381 +	Brassica oleracea	Bol-MIR166a	Bol-C04: 3332597-3332767 +
SY-112	Aly-MIR166a	Aly-scaffold_4: 22684208-22684381 +	Brassica oleracea	Bol-MIR166d	Bol-C04: 40715614-40715778 +
SY-113	Aly-MIR166a	Aly-scaffold_4: 22684208-22684381 +	Brassica rapa	Bra-MIR166b	Bra-A04: 21244922-21245087 +
SY-114	Aly-MIR166a	Aly-scaffold_4: 22684208-22684381 +	Eutrema salsugineum	Esa-MIR166a	Esa-scaffold_22: 1329544-1329726 +
SY-115	Aly-MIR166a	Aly-scaffold_4: 22684208-22684381 +	Eutrema salsugineum	Esa-MIR166d	Esa-scaffold_19: 528598-528750 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL1G60240.t1	0.5	NA	NA
AL1G44520.t1	1.0	NA	NA
AL4G30700.t1	1.0	NA	NA
AL7G18830.t1	1.0	NA	NA
AL8G37280.t1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR166a

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