PmiREN: Plant microRNA Encyclopedia

Aly-MIR166b

Basic info.

miRNA locus ID
Aly-MIR166b

miRNA locus accession
PmiREN000437

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_5 20552771 20552919 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

         TTTTTCTT   A     C  TT      C       -  CTT        A     -   TT  AATAG
   GAGGGA        TTG GGGGA TG  GTCTGG TCGAGGT CT   ATTCTAAT CAATC TCA  TC     
   ||||||        ||| ||||| ||  |||||| ||||||| ||   |||||||| ||||| |||  ||      
   CTCCCT        AAC CCCCT AC  CGGACC GGCTCTA GA   TGGGATTA GTTAG AGT  AG     
ACT      -CATTATT   C     T  TT      A       C  TTT        -     T   CT  ACTCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-116	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Arabidopsis thaliana	Ath-MIR166a	Ath-Chr2: 19176108-19176281 +
SY-117	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Arabidopsis thaliana	Ath-MIR166b	Ath-Chr3: 22922192-22922341 +
SY-118	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Brassica oleracea	Bol-MIR166a	Bol-C04: 3332597-3332767 +
SY-119	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Brassica oleracea	Bol-MIR166c	Bol-C08: 32995401-32995551 +
SY-120	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Brassica rapa	Bra-MIR166b	Bra-A04: 21244922-21245087 +
SY-121	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Brassica rapa	Bra-MIR166c	Bra-A05: 682813-682983 -
SY-122	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Brassica rapa	Bra-MIR166f	Bra-A09: 37793849-37794001 +
SY-123	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Eutrema salsugineum	Esa-MIR166a	Esa-scaffold_22: 1329544-1329726 +
SY-124	Aly-MIR166b	Aly-scaffold_5: 20552771-20552919 +	Eutrema salsugineum	Esa-MIR166d	Esa-scaffold_19: 528598-528750 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL1G60240.t1	0.5	NA	NA
AL1G44520.t1	1.0	NA	NA
AL4G30700.t1	1.0	NA	NA
AL7G18830.t1	1.0	NA	NA
AL8G37280.t1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR166b

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