PmiREN: Plant microRNA Encyclopedia

Aly-MIR166d

Basic info.

miRNA locus ID
Aly-MIR166d

miRNA locus accession
PmiREN000439

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_6 3632166 3632304 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 CCTT    -TTAG     A A      TT      C      -    GA  -AAGA     -----    TGA
     TGGT     GGTTG G GGAATG  GTCTGG TCGAGG TCAT  AG     TCATT     AGAT   
     ||||     ||||| | ||||||  |||||| |||||| ||||  ||     |||||     ||||    
     ACTA     CCAAC C CCTTAC  CGGACC GGCTCT AGTA  TC     AGTAA     TCTA   
CTTAC    TACAG     C C      TT      A      T    AA  CCAAA     GAAAT    CTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3152
Chromosome: Aly-scaffold_6
Cluster start: 3626977
Cluster end: 3632304

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Aly-MIR166c , Aly-MIR166d	PmiREN000438, PmiREN000439	Aly-scaffold_6	+	3626977	3632304

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL1G60240.t1	0.5	NA	NA
AL1G44520.t1	1.0	NA	NA
AL4G30700.t1	1.0	NA	NA
AL7G18830.t1	1.0	NA	NA
AL8G37280.t1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR166d

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