Aly-MIR166e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   T     TTTTTCTT            TT      CA   G C C      TAGATCTATAT      --      CTCTTCTTTATTT
    GAAGC        TTGAGGGGAATG  GTCTGG  CGA G C TTAACT           TTGATT  TTATGT             
    |||||        ||||||||||||  ||||||  ||| | | ||||||           ||||||  ||||||             A
    CTTCG        AACTCCCCTTAC  CGGACC  GCT C G AATTGG           AGCTAG  AGTACA             
GCTT     -CTATATT            TT      AG   G A T      ----CAATTTT      TA      TATATATCTGATT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-134 Aly-MIR166e Aly-scaffold_7: 21195594-21195766 + Arabidopsis thaliana Ath-MIR166e Ath-Chr5: 16775504-16775676 -
SY-135 Aly-MIR166e Aly-scaffold_7: 21195594-21195766 + Brassica rapa Bra-MIR166a Bra-A04: 11059701-11059852 +
SY-136 Aly-MIR166e Aly-scaffold_7: 21195594-21195766 + Brassica rapa Bra-MIR166e Bra-A07: 15385796-15385945 -
SY-137 Aly-MIR166e Aly-scaffold_7: 21195594-21195766 + Capsella rubella Cru-MIR166e Cru-scaffold_7: 15274115-15274322 +
SY-138 Aly-MIR166e Aly-scaffold_7: 21195594-21195766 + Eutrema salsugineum Esa-MIR166c Esa-scaffold_14: 2294318-2294494 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL1G60240.t1 0.5 NA NA
AL1G44520.t1 1.0 NA NA
AL4G30700.t1 1.0 NA NA
AL7G18830.t1 1.0 NA NA
AL8G37280.t1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference