Aly-MIR167a

Basic info.

• miRNA locus ID
• Aly-MIR167a

• miRNA locus accession
• PmiREN000444

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_3  10278868  10279012  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 TAT     AC   -  T T A         C              -  -   -     A  T           T
    GGTGC  CGG CA C G TGAAGCTGC AGCATGATCTAATT AG CTT TCTTT TA CTGTTGTTGTG 
    |||||  ||| || | | ||||||||| |||||||||||||| || ||| ||||| || ||||||||||| T
    CCACG  GTC GT G C ACTTTGACG TTGTACTAGATTAG TC GAG AGAGA AT GGTAGCAATAC 
ATTC     CT   A  T C C         C              C  T   T     -  T           T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference