Aly-MIR167b

Basic info.

• miRNA locus ID
• Aly-MIR167b

• miRNA locus accession
• PmiREN000445

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_5  21158390  21158522  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

CAA    ---  AA     CA     A    - -C           T   T    -   A   GA    GT
   GTCC   AC  GGGAA  AGTGA GCTG C  AGCATGATCTA CTT GGTT AAG GAT  ATGT  
   ||||   ||  |||||  ||||| |||| |  ||||||||||| ||| |||| ||| |||  ||||   
   CAGG   TG  TCCTT  TCACT CGAC G  TCGTACTGGAT GAA CCAA TTC TTA  TACA  
TAC    ATT  -G     CC     C    A TC           C   C    A   G   --    AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference