Aly-MIR167c

Basic info.

• miRNA locus ID
• Aly-MIR167c

• miRNA locus accession
• PmiREN000446

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_3  1657178  1657357  -

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

TAC     AC    ----     -TT                  T     C       -     ----       -   --T    -TTAA      G
   CATGT  CAGT    AGCAG   AAGCTGCCAGCATGATCT GTCTT CTCTCTT AAGTT    TCATATA TAA   CAAG     TATAAA 
   |||||  ||||    |||||   |||||||||||||||||| ||||| ||||||| |||||    ||||||| |||   ||||     |||||| A
   GTACG  GTTA    TCGTC   TTTGATGGTCGTACTGGA CAGAG GAGAGAG TTCGA    AGTATAT ATT   GTTC     ATGTTT 
        AT    GTAA     CAC                  T     A       A     TACT       T   CTT    TTAAC      T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference